Basic Examples (2)
Basic Examples
(2)
Import a simple NCBI Reference Sequence and give the raw header and sequence:
In[9]:=
Shortmitoc=["NC_013993"],5
Out[9]//Short=
{{NC_013993.1 Homo sp. Altai mitochondrion, complete genome},{GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTGTGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCAC…GCCCATAACACTTGGGGGTAGCTAAAGTGAGCTGTATCCGGCATCTGGTTCCTACTTCAGGGCCATAAAGTCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATG}}
Use the chaos game representation to visualize this genome:
In[12]:=
srules={"U""T",Except[Characters["ACGT"]]""};
In[16]:=
ResourceFunction["FCGRImage"][StringReplace[mitoc[[2,1]],srules],7]
Out[16]=